Data Sources

Acquiring Genomic Data from NCBI

April 4, 2023
Monica Donegan
by Monica Donegan. Genomic data is essential for studying evolutionary biology, human health, and epidemiology. Public agencies, such as the National Center for Biotechnology Information (NCBI) offer excellent resources and access to vast quantities of genomic data. This blog introduces a brief workflow to download genomic data from public databases.

Why We Need Digital Hermeneutics

July 13, 2023
Tom van Nuenen
by Tom van Nuenen. Tom van Nuenen discusses the sixth iteration of his course named Digital Hermeneutics at Berkeley. The class teaches the practices of data science and text analysis in the context of hermeneutics, the study of interpretation. In the course, students analyze texts from Reddit communities, focusing on how these communities make sense of the world. This task combines both close and distant readings of texts, as students employ computational tools to find broader patterns and themes. The article reflects on the rise of AI language models like ChatGPT, and how these machines interpret human interpretations. The popularity and profitability of language models presents an issue for the future of open research, due to the monetization of social media data.

My Summer Exploring Data Science for Social Justice: Learnings, Tensions & Recommendations

September 5, 2023
Genevieve Smith
by Genevieve Smith. This summer I joined the D-Lab hosted Data Science for Social Justice workshop at UC Berkeley diving into Python – including TF-IDF, sentiment analysis, word embeddings, and more – with a lens towards leveraging data science for social justice. My team explored a Reddit channel on abortion and used computational analysis to answer key questions related to abortion access from before versus after Roe vs. Wade was overturned. Computational social science is incredibly powerful, but I continue to grapple with tensions particularly as it relates to employing machine learning and large language in international research, and end with key recommendations for CSS practitioners.

Artificial Intelligence (AI) Systems, the Poor, and Consent: A Feminist Anti-Colonial Lens to Digitalized Surveillance

September 18, 2023
Alejandro Nuñez
By Alejandro Nuñez. Today’s digital age has created a sea of endless datafication where our everyday interactions, actions, and conversations are turned into data. The advancements of automated artificial intelligence (AI) systems, and their infrastructure in which they are created and trained on, have catapulted us into an era of consistent monitoring and surveillance.

Exploring Population Data with IPUMS

November 8, 2022
Kelly Quinn
Exploring Population Data with IPUMS

Last month, demographer and historian Steve Ruggles was awarded a prestigious MacArthur Foundation Fellowship for his work developing IPUMS—a harmonized database of individual and family responses to large-scale domestic and international surveys. With some samples going as far back as the 18th century, IPUMS can offer key insights into changing demographics, norms, and decision-making over...

Ella Belfer

Consultant
Energy and Resources Group

Ella is a PhD student in the Energy and Resources Group. Her research examines water governance in a changing climate, drawing on geo-spatial techniques. Her past work includes applications of topic modelling in climate change adaptation research, and inductive coding of semi-structured interviews.

Michael Sholinbeck

Public Health Librarian
Bioscience, Natural Resources & Public Health Library

Michael has worked at the UC Berkeley Library since 2001, and is currently the Public Health Librarian and Liaison to the School of Optometry at the Bioscience, Natural Resources & Public Health Library. Michael coordinates public health instruction at the library, and is responsible for the public health collection. Michael has a MLIS from San Jose State University, an MS in Geography from Oregon State University, and a BA in Geography from UC Berkeley. When not at work he lives out his fantasy of being a rock and roll drummer.

Ian Castro

D-Lab Alumni
School of Information

Ian is a graduate student in the Master of Information Management and Systems program at the School of Information with a focus in applied data science. He earned his B.A. in Media Studies and B.S. in Microbial Biology from UC Berkeley, and his research interests and work experience are in STEM education. He focuses in building courses and academic programs to make data and computing accessible to historically marginalized students and those without prior exposure to the field.