Quantitative Analysis

In Silico Approach to Mining Viral Sequences from Bulk RNA-Seq Data

October 28, 2025
Carly Karrick
by Carly Karrick. Viruses play important roles in evolution and influence ecosystems and host health. However, isolating and studying them can be difficult. In lieu of using resource-intensive methods to concentrate viruses into a “virome,” bulk sequencing methods include data from all biological entities present in a sample. In this tutorial, we explore an approach to mine viral sequences from publicly available bulk RNA-Seq data. The output from this analysis paves the way for future statistical analyses comparing viral communities in different contexts. This approach can be applied to other datasets, including studies of human health.

Python Data Wrangling and Manipulation with Pandas

October 19, 2021, 10:00am
Pandas is a Python package that provides fast, flexible, and expressive data structures designed to make working with 'relational' or 'labeled' data both easy and intuitive. It enables doing practical, real world data analysis in Python. In this workshop, we'll work with example data and go through the various steps you might need to prepare data for analysis.

Skyler Yumeng Chen

Data Science & AI Fellow 2025-2026, Data Science for Social Justice Fellow 2024
Haas School of Business

Skyler is a Ph.D. student in Behavioral Marketing at the Haas School of Business. Her research centers on consumer behavior and judgment and decision-making, with a keen interest in both experimental methods and data science techniques. She holds a B.A. in Economics and a B.S. in Data Science from New York University Shanghai.

Decision-Making Under Pressure during My PhD: Lessons from whale songs and ocean noise

May 6, 2025
Jaewon Saw
by Jaewon Saw. This blog post shares a story from a field experiment using Distributed Acoustic Sensing (DAS) to detect whale vocalizations in Monterey Bay. Most of the data got overwhelmed by noise from boat engines, wave motion, and cable instability. On the final day, a spur-of-the-moment decision to add loops to the fiber optic cable dramatically improved signal quality.

Sahiba Chopra

Data Science Fellow 2024-2025
Haas School of Business

I'm a PhD student in the Management and Organizations (Macro) group at Berkeley Haas. I have a diverse professional background, primarily as a data scientist across numerous industries, including fintech, cleantech, and media. I hold a BA in Economics from the University of Maryland, an MS in Applied Economics from the University of San Francisco, and an MS in Business Administration from UC Berkeley.

My research focuses on the intersection of inequality, technology, and the labor market. I am particularly interested in understanding how to reduce inequality in...

Why Data Disaggregation Matters: Exploring the Diversity of Asian American Economic Outcomes Using Public Use Microdata Sample (PUMS) Data

February 11, 2025
Taesoo Song
by Taesoo Song. Asian Americans are often overlooked in discussions of racial inequality due to their high average socioeconomic attainment. Many academic and policy researchers treat Asians as a single racial category in their analysis. However, this broad categorization can mask significant within-group disparities, leaving many disadvantaged individuals without access to vital resources and policy support. Song emphasizes the importance of data disaggregation in revealing Asian American inequalities, particularly in areas like income and homeownership, and demonstrates how breaking down these categories can lead to more targeted and effective policy solutions.

Field Experiments in Corporations

January 28, 2025
Yue Lin
by Yue Lin. How do social science researchers conduct field experiments with private actors? Yue Lin provides a brief overview of the recent developments in political economy and management strategy, with a focus on filing field experiments within private corporations. Unlike conventional targets like individuals and government agencies, private companies are an emergent sweet spot for scholars to test for important theories, such as sustainability, censorship, and market behavior. After comparing the strengths and weaknesses of this powerful yet nascent method, Lin brainstorms some practical solutions to improve the success rate of field experimental studies. She aims to introduce a new methodological tool in a nascent research field and shed some light on improving experimental quality while adhering to ethical standards.

Which Coin Should I Flip? The Multi-Arm Bandit

February 4, 2025
Bruno Smaniotto
by Bruno Smaniotto. Consider the following game: You are given the option to choose between two coins to flip. These coins are possibly biased, so the probability of getting Heads for each coin might differ from 50/50. Each time that you flip Heads, you win one dollar. There are a total of 10 rounds. Which coin should you flip at each round? In this blog post, we will analyze this problem through the lens of a famous decision-making algorithm called the Multi-Arm Bandit, exploring how to structure the problem mathematically and how it can be solved for particular examples.

Measuring Vowels Without Relying on Sex-Based Assumptions

April 8, 2025
Amber Galvano
by Amber Galvano. This tutorial builds on my previous post on Python for acoustic analysis, this time focusing on measuring vocal tract resonances without relying on sex-based assumptions. I demonstrate how to process audio files and vowel annotations using an adaptive method that optimizes the acoustic analysis across a recording. Instead of fixing parameters based on generalized vocal tract length correlations, this approach varies them within a defined range for greater accuracy. This not only enhances measurement precision but also avoids requiring (or assuming) speakers’ sex in data collection. Finally, I show how to filter for outliers and create high-quality vowel space visualizations.

Causal Effect Estimation in Observational Field Studies of Thermal Comfort

April 1, 2025
Ruiji Sun
by Ruiji Sun. We introduce and apply regression discontinuity to thermal comfort field studies, which are typically observational. The method utilizes policy thresholds in China, where the winter district heating policy is based on cities' geographical locations relative to the Huai River. Using the regression discontinuity method, we quantify the causal effects of the experiment treatment (district heating) on the physical indoor environments and subjective responses of building occupants. In contrast, using conventional correlational analysis, we demonstrate that the correlation between indoor operative temperature and thermal sensation votes does not accurately reflect the causal relationship between the two. This highlights the importance of causal inference methods in thermal comfort field studies and other observational studies in building science where the regression discontinuity method might apply.